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Intein Name: Tli pol-1. The intein
name should consist of a 3 letter organism specification, where
the first letter is the first letter of the Genus (Thermococcus)
and the second and third letters are a Species designation (litoralis).
The organism abbreviation is then followed by an abbreviation for
the extein gene (Pol). If more than 1 intein is present in a gene,
they should be numbered in order of appearance from the N- to C-terminus.
For organisms with only a genus designation and an isolate code,
such as Psp Pol or Tsp Pol inteins, include a strain designation
- Example: Psp-KOD Pol.
Intein size (aa):
List the number of amino acids in the intein, not including the
C-extein S/T/C.
Endo Activity: If endonuclease activity
has been demonstrated, list endonuclease name. Convention dictates
that the endonuclease name is preceded by the 'PI-' prefix.
Endo Motif: List: 'DOD' if a member
of the LAGLIDADG or dodecapeptide motif family; 'HNH' if a member
of the HNH family; 'none' if no large insert is present between
intein Blocks B and F; and 'unknown' if a large insert (>100
aa) is present that doesn't have any of the known homing endonuclease
signature motifs. Leave blank if you are not sure.
Location in extein (aa preceding intein):
List the amino acid preceding the intein (using the single letter
code) and its position in the extein, with amino acid 1 being the
initiating Met of the extein gene.
N-terminal Splice Junction: Last 10
N-extein residues/intein N-terminus (single letter code).
C-terminal Splice Junction: Last 2
amino acids of the intein/first 10 amino acids of the C-extein (single
letter code).
Insert Site: Include the insertion
site name consisting of the abbreviated extein name and an alphabetic
designation for insertion sites in that extein, taking into account
the previously identified insertion sites in extein homologs. Also
list notable landmarks like motifs or active site residues.
|
Intein
name
|
Intein
Size
|
Endo activity
|
Endo
motif
|
Location
in extein
|
N-terminal Splice Junction
|
C-terminal Splice Junction
|
Insert Site
|
| Cba-WM02.98 PRP8
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cba-WM728 PRP8
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cla PRP8
|
522
|
-- |
DOD |
S59?
|
TWEGLFWEKS/C |
HN/SGFEESMKFK |
PRP8-a,same as A1578 in Sce PRP8 |
| Cga PRP8
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cgl VMA
|
415
|
-- |
DOD |
G276
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Cne-a RP8 (Fne-A PRP8)
|
171
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEE----- |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne-AD PRP8 (Fne-AD PRP8)
|
172
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne-JEC21 PRP8
|
172
|
-- |
None |
A1530
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cpa ThrRS
|
182
|
-- |
None |
N399
|
KETFGLKPMN/C |
GN/CPGHCILFKS |
thrRS-a |
| Ctr ThrRS
|
345
|
-- |
-- |
N399
|
KETFGLKPMN/C |
GN/CPGHAVMFKS |
thrRS-a |
| Ctr VMA
|
471
|
-- |
DOD |
G283
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Dhan GLT1
|
607
|
-- |
DOD |
R1183
|
IALGCIMMRR/C |
AN/CHLNTCPVGI |
GLT1-a |
| Dhan VMA
|
394
|
-- |
DOD |
G271
|
SNSDLMVYIG/C |
HN/CGERGNEMAE |
VMA-a |
| Kla-CBS683 VMA
|
410
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kex-CBS379 VMA
|
502
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kla-IFO1267 VMA
|
410
|
-- |
DOD |
G276
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kla-NRRLY1140 VMA
|
410
|
-- |
DOD |
G283
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Lel VMA
|
421
|
-- |
DOD |
G279
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Pgu GLT1
|
553
|
-- |
DOD |
K1186
|
IAMGCIMMRK/C |
AN/CHLNTCPVGI |
GLT1-a |
| Pgu-alt GLT1
|
553
|
-- |
DOD |
K?
|
IAMGCIMMRK/C |
SN/CHLNTCPVGI |
GLT1-a, R1183 of Dha GluSyn |
| Pst VMA
|
449
|
-- |
DOD |
G282
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sca-CBS4309 VMA
|
517
|
-- |
DOD |
G18?
|
SNSDSIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sca-IFO1992 VMA
|
517
|
-- |
DOD |
G265
|
SNSDSIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Scar VMA
|
454
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA
|
454
|
PI-SceI |
DOD |
G283
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce-DH1-1A VMA
|
454
|
-- |
DOD |
G28?
|
SNSDAIIYVGlC |
HN/CGERGNEMAE |
VMA-a |
| Sce-OUT7091 VMA
|
454
|
-- |
DOD |
G258
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce-OUT7112 VMA
|
454
|
-- |
DOD |
G258
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sda VMA
|
501
|
-- |
DOD |
G18?
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sex-IFO1128 VMA
|
499
|
-- |
DOD |
G267?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sja VMA
|
476
|
-- |
DOD |
G284
|
SNSDLIVYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Spa VMA
|
454
|
-- |
DOD |
G269
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sun VMA
|
414
|
-- |
DOD |
G18?
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Tgl VMA
|
456
|
-- |
DOD |
G18?
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Tpr VMA
|
455
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Vpo VMA
|
433
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Zba VMA
|
456
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Zbi VMA
|
450
|
-- |
DOD |
G18?
|
SNSDAIVYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Zro VMA
|
450
|
-- |
DOD |
G18?
|
SNSDAIVYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Cba PRP8
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cba PRP8-1
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cba PRP8-2
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cba PRP8-3
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8
|
172
|
-- |
None |
A1530
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-1
|
172
|
-- |
None |
A1530
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Fne PRP8
|
236
|
-- |
None |
A1530
|
TWEGLFWEKA/C |
HN/ SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-2
|
219
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-3
|
171
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEE----- |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-4
|
171
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEE----- |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-5
|
171
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEE----- |
PRP8-a, same as A1578 in Sce PRP8 |
| Cne PRP8-6
|
171
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEE----- |
PRP8-a, same as A1578 in Sce PRP8 |
| Cgl VMA-1
|
415
|
-- |
DOD |
G276
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Cgl VMA-2
|
415
|
-- |
DOD |
G276
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kun VMA
|
414
|
-- |
DOD |
G18?
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Vpo VMA-1
|
433
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Vpo VMA-2
|
433
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA-1
|
454
|
-- |
DOD |
G269
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kun VMA-1
|
414
|
-- |
DOD |
G18?
|
SNSDTIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kex VMA
|
499
|
-- |
DOD |
G267?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Kex VMA-1
|
502
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA-2
|
454
|
PI-SceI |
DOD |
G283
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA-3
|
454
|
-- |
DOD |
G258
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA-4
|
454
|
-- |
DOD |
G258
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Sce VMA-5
|
586
|
-- |
DOD |
G269
|
-------------------- |
KS/CGNNAGARIC |
VMA-a |
| Spa VMA-1
|
586
|
-- |
DOD |
G269
|
------------------- |
KS/CGNNAGARIC |
VMA-a |
| Sce VMA-6
|
572
|
-- |
DOD |
G258
|
-------------- |
-------------- |
VMA-a |
| Lel VMA-1
|
421
|
-- |
DOD |
G279
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Lel VMA-2
|
421
|
-- |
DOD |
G279
|
SNSDVIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Cne PRP8-7
|
172
|
-- |
None |
A1530
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a |
| Sce VMA-7
|
454
|
PI-SceI |
DOD |
G283
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Cba PRP8-4
|
170
|
-- |
None |
A?
|
TWEGLFWEKA/C |
HN/SGFEESMKNK |
PRP8-a, same as A1578 in Sce PRP8 |
| Pgu GLT1-a
|
553
|
-- |
DOD |
K1186
|
IAMGCIMMRK/C |
AN/CHLNTCPVGI |
GLT1-a |
| Pgu GLT1-b
|
553
|
-- |
DOD |
K1186
|
IAMGCIMMRK/C |
AN/CHLNTCPVGI |
GLT1-a |
| Vpo VMA-1
|
433
|
-- |
DOD |
G18?
|
SNSDAIIYVG/C |
HN/CGERGNEMAE |
VMA-a |
| Spa VMA-2
|
586
|
-- |
DOD |
G269
|
- |
KS/CRGCCVGEQL |
VMA-a |
| Cgl VMA-3
|
578
|
-- |
DOD |
G18?
|
- |
YS/CTECCETDAV |
VMA-a |
| Cgl VMA-4
|
464
|
-- |
DOD |
G18?
|
- |
YS/CTECCETDAV |
VMA-a |
| Cgl VMA-5
|
578
|
-- |
DOD |
G18?
|
- |
YS/CTECCETDAV |
VMA-a |
| Vpo VMA-2
|
464
|
-- |
DOD |
G269
|
-- |
PV/CGSHCEKEQP |
VMA-a |
| Vpo VMA-3
|
464
|
-- |
DOD |
G269
|
- |
PV/CGSHCEKEQP |
VMA-a |
| Sce VMA-8
|
465
|
-- |
DOD |
G269
|
-- |
KS/CRGCCVGEQL |
VMA-a |
| Sce VMA-9
|
465
|
-- |
DOD |
G269
|
- |
KS/CRGCCVGEQH |
VMA-a |
| Sce VMA-10
|
465
|
-- |
DOD |
G269
|
- |
KS/CRGCCVGEQH |
VMA-a |
| Spa VMA-3
|
465
|
-- |
DOD |
G269
|
- |
KS/CRGCCVGEQL |
VMA-a |
| Sba VMA
|
465
|
-- |
DOD |
G269
|
- |
KS/CGGYCEGEQP |
VMA-a |
|