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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Vpo VMA-3
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| Intein
id |
YSTIN080 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Sce VMA
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| Organism
Name |
Vanderwaltozyma polyspora DSM 70294 |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:436907 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G269 |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
464 |
| Intein
N Terminal |
- |
| Intein
C Terminal |
PV/CGSHCEKEQP |
| Accession
No |
EDO17985.1 in NCBI/ protein |
| Intein
aa Sequence |
>gi|156116512|gb|EDO17985.1| hypothetical protein Kpol_1054p32 [Vanderwaltozyma polyspora DSM 70294]
MFEEGTRIIMADGTSKDISEIIPNDFIMCEDGSAAKVTEVSQDNQTTYQIVHNTKHRANEGDAARKDPLR
KEIYQRLELNCTVAHELSLRTPATVNLENSFRTNHYKVRWRNLEETLTVDGRMICIPKNHHKDFPMTPEG
ELSARAFMAEMEAENGEYFEFNLQVRDLDLLSPQIRVTSFLHFNPIIKGNGILSEFLTGEKHLITTGVLQ
MAWLLGLWIGDGTTKEPEITVDSHDTELMKGLHECGKTWGLYPTYKDEKIPLRAKHVRLYYGKEAPENRK
YRHFRKHNPFWNAVTCLKFKRDGDGAKQIPTFMWSEDVEVREAFMAGLIDADGYVVKRKEGPDSFKVAIQ
TIYPSIMNGVINISRSLGINATVTTRSAKPSIIAGRKVNCQFTFDCNIAGRAPLQSILSYCTSGHKRRDR
PVLIAREPSYFGFLEEKRDKHEVYGIKINSHKSILLENKMAVPV |
| Block
A |
MFEEGTRIIMADG 13 |
| Block
B |
RLELNCTVAHELSL 89 |
| Block
C |
LLGLWIGDG 222 |
| Block
D |
AKQIPTFM 313 |
| Block
E |
FMAGLIDADG 333
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| Block
H |
-- |
| Block
F |
YGIKIN**SHKSIL 455 |
| Block
G |
NKMAVPV 464
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| Contributed
by |
Dhiraj Sharma, Neelmani Vashistha, Surender Yadav |
| Comments |
This intein is 80% similar to Spa VMA, Sce-OUT7112 VMA, Sce-DH1-1A VMA and having N-terminal and C- terminal motifs and similar four endonuclease motifs. |
| References |
Okuda 2003 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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