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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Spa VMA-2
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| Intein
id |
YSTIN075 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Sce VMA
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| Organism
Name |
Saccharomyces pastorianus, strain KBY001 |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:27292 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G269 |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
586 |
| Intein
N Terminal |
- |
| Intein
C Terminal |
KS/CRGCCVGEQL |
| Accession
No |
BAA94596.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|7576436|dbj|BAA94596.1| endonuclease for mating-type conversion [Saccharomyces pastorianus]
MLSENTTILMANGEIKDIANVTANSYVMCEDGSAARVISVTQGCQKIYNIQQKTKHRAFEGEPGRLDPRR
RTIYQRLDLQCTAGHKLSVRVPTKPLLEKSGRSATKYKVRWRNLQQCQTLDGRIITIPKNHHKTFPMTVE
GEFAAKCFIEEMELLKGEYFNFDIEVRDLDYLDAQLRISSCIRFSPVIAGNGVLSKFLTGRNDLVTPAVK
SMAWMLGLWLGDGTTKEPEISVDSLDPKLMESLREQAKIWGLYLTVCDDHVPLRAKHVRLHYGDGPDENR
KTKNLRKNNPFWNAVTKLKFKRELDGEKQIPEFMYSEHVEVREAFLAGLIDSDGYVVKKGEGPESYKIAI
QTVYSSIMDGVVHISRSLGMSATVTTRSAREEIIEGRKVQCQFTYDCNVAGGTTLQNVLSYCRSGHKTRE
IPPIVKREPVYFGFTDDFQGESTVYGLHIEGHKSYLLGNKIEVKS |
| Block
A |
MLSENTTILMANG 13 |
| Block
B |
RLDLQCTAGHKLSV 89 |
| Block
C |
MLGLWLGDG 223 |
| Block
D |
EKQIPEFM 314 |
| Block
E |
FLAGLIDSDG 334
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| Block
H |
TVYSSIMDGVVHISRSLGM 370 |
| Block
F |
TVYGHHIEGHKSYL 456 |
| Block
G |
NKIEVKS 465
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| Contributed
by |
Dhiraj Sharma, Neelmani Vashistha, Surender Yadav |
| Comments |
This intein is 80% similar to Spa VMA, Sce-OUT7112 VMA, Sce-DH1-1A VMA and having N-terminal and C- terminal motifs and similar four endonuclease motifs. |
| References |
-- |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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