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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Pgu GLT1-b
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| Intein
id |
YSTIN073 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Dhan GLT1
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| Organism
Name |
Pichia guilliermondii ATCC 6260 |
| Exiein
Name |
Glutamate synthase (NADPH-GOGAT) |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, Taxon 294746 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
K1186 |
| Inert
Site Comment |
GLT1-a |
| Intein
Size |
553 |
| Intein
N Terminal |
IAMGCIMMRK/C |
| Intein
C Terminal |
AN/CHLNTCPVGI |
| Accession
No |
EDK40360.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|146392202|gb|EDK40360.1| conserved hypothetical protein [Pichia guilliermondii ATCC 6260]
CLASDTLVRTTQGLKKVKDVSVGEYLYGADNTPVLCIGANAPETGSLKEIVYEDFDSKKLVSFKCTPDHHLELV
LANAAPELSGSTVTWFSSCTGEHKKQDSTFDLESIVSSFYNDLVDSDDIITFDNVCEAIDVALDEHYHRG
GSDRYSEKFNGFITQIANEELKSNPEFVRNALHEAAEKFMVEDAPKNFAVTSVSVETTSVESQSVCKSSC
ACGGVRKIVHQFETIEEAEMAYSLLLSDVYDRVDPSFVSNGYKFQASVEALEQMCSKDILHNHLHMYRAP
AEQVEPLTHSSSLPVDPYFLGLWLGEGSSDSATILTTDREVVVWLQQYVERLNKDKPAEASPLRLTKING
FKPGQQMANGFVQKVTVPTYTITSGESFTGGNWNPVYNSLKLMGLLSNKSNGIPEAYKAADLQSRLALLA
GLVDSDGCYVESYNSYRFMQKSELHKKIVYDLKEMATSCGIETTDIDVSESRLYLGSSETTSAYVVYLGS
GSEKLQQLLLLPRKKMVRIESCIQESTPFKVQDVANGEFRAIEVSGGKFQLDNGLQIAN |
| Block
A |
CLASDTLVRTTQG 13 |
| Block
B |
LVSFKCTPDHHLEL 73 |
| Block
C |
FLGLWLGEG 311 |
| Block
D |
NKDKPAEA 344 |
| Block
E |
LLAGLVDSDG 431
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| Block
H |
ELHKKIVYDLKEMATSCGI 465 |
| Block
F |
GEFRAI**EVSGGKFQ 544 |
| Block
G |
NGLQIAN 553
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| Contributed
by |
Dhiraj Sharma, Neelmani Vashistha, Surender Yadav |
| Comments |
This intein is 99% similar to Pgu GLT1, Pgu-alt GLT1, and having N-terminal and C- terminal motifs and similar four endonuclease motifs. |
| References |
Butler 2005 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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