|
| The
Yeast Intein Database |
|
The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
|
|
| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
|
|
| |
|
| Intein
Name |
Cba PRP8-4
|
| Intein
id |
YSTIN071 |
| Intein
Class |
Theoretical
|
| Prototype
Allele |
Cne-AD PRP8
|
| Organism
Name |
Cryptococcus bacillisporus, strain CBS8273 |
| Exiein
Name |
PRP8 |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:37769 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
None |
| Location
in Extein |
A? |
| Inert
Site Comment |
PRP8-a, same as A1578 in Sce PRP8 |
| Intein
Size |
170 |
| Intein
N Terminal |
TWEGLFWEKA/C |
| Intein
C Terminal |
HN/SGFEESMKNK |
| Accession
No |
AAX38546.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|61105778|gb|AAX38546.1| mini-intein [Cryptococcus bacillisporus]
CLQNGTRLLRADGSEILVEDVQEGDHLLGPDGTSRTASKIVRGEERLYRIKADELEDLVCTHNHILSLYK
ERSGSEQDPSPSTDLSSTDSYERVDVTVDDFVSLPQQEQQKYRLFRSTGFKRADQPSTSSLATLLHIMSI
QLEEKPTKWSGFVVDKDSLYLRHDYLVLHN |
| Block
A |
CLQNGTRLLRADG 13 |
| Block
B |
LEDLVCTHNHILSL 68 |
| Block
C |
None |
| Block
D |
None |
| Block
E |
None
|
| Block
H |
None |
| Block
F |
PTKWSGFVVDKDSLYL 161 |
| Block
G |
DYLVLHN 170
|
| Contributed
by |
Dhiraj Sharma, Neelmani Vashistha, Surender Yadav |
| Comments |
This intein is 99% similar to Cga PRP8, Cba-WM728 PRP8, Cba-WM02.98 PRP8, VMA, and having N-terminal and C- terminal motifs. |
| References |
Butler 2005 |
|
|
|
Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
|
|
|
|
|
|
|
Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
|
Disclaimer:
IBI Databases and associated information are protected by copyright.
This server and its associated data and services are for academic, non-commercial
use only. The IBI has no liability for the use of results, data or information
which have been provided through this server. Neither the use for commercial
purposes nor the redistribution of IBI database files to third parties
nor the distribution of parts of files or derivative products to any
third parties is permitted. Commercial users may contact the IBI BIosolutions
Pvt. Ltd.
|