|
| The
Yeast Intein Database |
|
The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
|
|
| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
|
|
| |
|
| Intein
Name |
Sce VMA-4
|
| Intein
id |
YSTIN063 |
| Intein
Class |
Theoretical
|
| Prototype
Allele |
Sce VMA
|
| Organism
Name |
Saccharomyces cerevisiae , strain S288C |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:4932 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G258 |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
454 |
| Intein
N Terminal |
SNSDAIIYVG/C |
| Intein
C Terminal |
HN/CGERGNEMAE |
| Accession
No |
AAB63978.1 in NCBI/protein, |
| Intein
aa Sequence |
>gi|172907|gb|AAB63978.1| transmembrane ATPase-like protein [Saccharomyces cerevisiae]
CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREV
IKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITF
EMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQ
TYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLN
LCAEYKDRKEPQVAKTVNLYSKVVRGNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRET
FLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSG
GDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN |
| Block
A |
CFAKGTNVLMADG 13 |
| Block
B |
LLKFTCNATHELVV 83 |
| Block
C |
LLGLWIGDG 219 |
| Block
D |
VKNIPSFL 307 |
| Block
E |
FLAGLIDSDG 327
|
| Block
H |
TIHTSVRDGLVSLARSLGL 359 |
| Block
F |
YGITLS**DDSDHQFL 445 |
| Block
G |
NQVVVHN 454
|
| Contributed
by |
Dhiraj Sharma , Neelmani Vashistha , Suernder Yadav |
| Comments |
This intein is 99% similar to Sce VMA, Sce-OUT7091 VMA, Spa VMA, Sce-OUT7112 VMA , Sce-DH1-1A VMA, Scar VMA intein and having similar N –terminal and C -terminal motifs and similar four endonuclease motifs. |
| References |
Okuda 2003 |
|
|
|
Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
|
|
|
|
|
|
|
Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
|
Disclaimer:
IBI Databases and associated information are protected by copyright.
This server and its associated data and services are for academic, non-commercial
use only. The IBI has no liability for the use of results, data or information
which have been provided through this server. Neither the use for commercial
purposes nor the redistribution of IBI database files to third parties
nor the distribution of parts of files or derivative products to any
third parties is permitted. Commercial users may contact the IBI BIosolutions
Pvt. Ltd.
|