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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Sun VMA
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| Intein
id |
YSTIN033 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Sce VMA
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| Organism
Name |
Saccharomyces unisporus, strain CBS 398 |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:27294 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G18? |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
414 |
| Intein
N Terminal |
SNSDTIIYVG/C |
| Intein
C Terminal |
HN/CGERGNEMAE |
| Accession
No |
CAC86354.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|27528480|emb|CAC86354.1|[27528480] Sun VMA intein (including -1 and +1 extein residues)
GCFEKGTEVLMADGTDKVIEDITIGEQVMGKDGQPREVVGLPRGKMTMYQVCHKATEQNE
IALMDYVCSGNHKFVLVTPQNVKITEHMLRGKMYTSVNYFVANDFENGQVVKLRTKTFQH
DIHGGADGAKVEAQKFASTIDLSPISWEIEASKYVELDVNVRNATTQLINPVFYESGKLA
SRLQTKNIDQTSADKLAYVMGSWVGAGSMDQPTFAGNQLDEEFVSRLTEYGSGLDLTKNN
SVWDIINESGLRTLNANGEATKTIPKELVSDSISVREHFIAGLVDTQGNVKRASTGAVET
ASISTVYERISNDLVKLARSLGIKASVSQQEEHVDAKGVDQQQTYNIKLTGSALNGVVRL
SALSKNRDEPVSFERLPVPFHFTLLEKAEDNYYGVTLPDATDKQYLLSSLALVHNC |
| Block
A |
CFEKGTEVLMADG 13 |
| Block
B |
LMDYVCSGNHKFVL 75 |
| Block
C |
VMGSWVGAG 206 |
| Block
D |
TKTIPKEL 267 |
| Block
E |
FIAGLVDTQG 287
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| Block
H |
TVYERISNDLVKLARSLGI 322 |
| Block
F |
YGVTLP**DATDKQYL 405 |
| Block
G |
SLALVHNC 415
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| Contributed
by |
Fran Perler |
| Comments |
Okuda 2003 indicates endo is inactive |
| References |
Koufopanou 2002
Okuda 2003 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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