|
| The
Yeast Intein Database |
|
The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
|
|
| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
|
|
| |
|
| Intein
Name |
Sja VMA
|
| Intein
id |
YSTIN031 |
| Intein
Class |
Theoretical
|
| Prototype
Allele |
Sce VMA
|
| Organism
Name |
Schizosaccharomyces japonicus Yfs275 |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Ascomycete fungus, taxon:402676 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G284 |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
476 |
| Intein
N Terminal |
SNSDLIVYVG/C |
| Intein
C Terminal |
HN/CGERGNEMAE |
| Accession
No |
AATM01000037 in NCBI/wgs |
| Intein
aa Sequence |
>gi|116048508|gb|AATM01000037.1|[116048508]| Sja VMA intein (including -1 and +1 extein residues)
GCFAKGTEVLMANGADKKIEDVVIGDKVMGKDGRPRDVVALPRGFDTMYT
VSQKISRKGAKSSNNLSYTCNATHKLVLKTPQQISLVEQVVRGKKQSSVS
FLRLADVVVGSSRGGDRRRIQIVKKVTKSFQHEPRGVEKARELAMEFLST
IGDDDIYWTIEARDYTLVSQEVRELTQQMISPVLFEKADLQNRLVKRGIS
AKYASEAAYLLGVWVGAGFSRSSAFSLYEEDSELVSRIISFGKALGLKAV
TAEHNPRTVKIVRGELGVDGTFTSEVEDLVEVVDFQEGSEIPAWEQRGNL
SVSFEGNTDNVFWKLISDLGFSGAVKSIPSHFAYESFPVREAFLAGLIDA
DGSVKHGDLSSAHLSTTSPKVRDGTVRIARSLGISAYVSTKSEQIVDGVY
YPETYTIELEGNEALQSVLSKSALSSNVAPAPGSFERKAVPMYFDLGITT
PANYYGVTLAEDSDHQFLLSNLTLVHNC |
| Block
A |
CFAKGTEVLMANG 13 |
| Block
B |
NLSYTCNATHKLVL 77 |
| Block
C |
LLGVWVGAG 217 |
| Block
D |
VKSIPSHF 331 |
| Block
E |
FLAGLIDADG 351
|
| Block
H |
TTSPKVRDGTVRIARSLGI 383 |
| Block
F |
YGVTLA**EDSDHQFL 467 |
| Block
G |
NLTLVHNC 477
|
| Contributed
by |
Russell Poulter, Margi Butler, Tim Goodwin |
| Comments |
-- |
| References |
-- |
|
|
|
Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
|
|
|
|
|
|
|
Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
|
Disclaimer:
IBI Databases and associated information are protected by copyright.
This server and its associated data and services are for academic, non-commercial
use only. The IBI has no liability for the use of results, data or information
which have been provided through this server. Neither the use for commercial
purposes nor the redistribution of IBI database files to third parties
nor the distribution of parts of files or derivative products to any
third parties is permitted. Commercial users may contact the IBI BIosolutions
Pvt. Ltd.
|