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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Sex-IFO1128 VMA
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| Intein
id |
YSTIN030 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Sce VMA
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| Organism
Name |
Saccharomyces exiguus, strain="IFO1128" |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:34358 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G267? |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
499 |
| Intein
N Terminal |
SNSDAIIYVG/C |
| Intein
C Terminal |
HN/CGERGNEMAE |
| Accession
No |
BAC66652 in NCBI/protein, gene=VMA1-1 |
| Intein
aa Sequence |
>gi|29420861|dbj|BAC66652.1|[29420861] Sex-IFO1128 VMA intein (including -1 and +1 extein residues)
GCFAKGTQVMMADGSDKSIEDIQLGENVMGKDGTPRTVISLPRGKETMYEVCHSSTKGTTKDTLMNYVCSGNHKIVMQTP
QQIGITEHGIDGKTYTSVSYFALRDSQHGYPIVKKLTKSFEHQQHGGKEQTLITVNNFVSSLKSEPINWDVEAKHYESLG
HYVKKCSYQLINPVFHQSGKLAQEIASLNYSKDKAPLLAWLIGFWVGNGAMRHSQFVVESQDIELVNRIQDIAGLLNLSA
TTACYYSGSKDDEAKLAKLNSSSAEGFEDDLEGNPSVKELADMDRLSESKTATLPTAFGVENIDELIISLGEGRGNGNVF
AQVIGSFGIDLADKDTLVTKIAHELAGDAFEVREQFVAGLVDAAGYVRKDVYDHASEATISTESKSTVLGLVKIARSLGI
KITVTSDDSDDSDEHDHAHCGHDHGSSSSYTAVMTGDALTNSMRFCAIGRNRVAAKEFMRQAVPFYFSLEKKSEDDYYGI
TVPDNTDKQYLLSSMALVHNC |
| Block
A |
CFAKGTQVMMADG 13 |
| Block
B |
LMNYVCSGNHKIVM 76 |
| Block
C |
LIGFWVGNG 208 |
| Block
D |
VTKIAHEL 344 |
| Block
E |
FVAGLVDAAG 364
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| Block
H |
TESKSTVLGLVKIARSLGI 399 |
| Block
F |
YGITVP**DNTDKQYL 490 |
| Block
G |
SMALVHNC 500
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| Contributed
by |
Fran Perler |
| Comments |
Okuda 2003 reports 2 distinct VMA intein alleles in strains IFO0316 and IFO1128 |
| References |
Koufopanou 2002
Okuda 2003 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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