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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Scar VMA
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| Intein
id |
YSTIN024 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Sce VMA
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| Organism
Name |
Saccharomyces cariocanus, strain="UFRJ 50791 |
| Exiein
Name |
Vacuolar ATPase (H+-transporting ATP synthase), subunit A |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, taxon:114526 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
G18? |
| Inert
Site Comment |
VMA-a |
| Intein
Size |
454 |
| Intein
N Terminal |
SNSDAIIYVG/C |
| Intein
C Terminal |
HN/CGERGNEMAE |
| Accession
No |
CAC86344.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|27528472|emb|CAC86344.1|[27528472] Scar VMA intein (including -1 and +1 extein residues)
GCFAKGTTVLMADGSIECIENIKIGDKVMGKDGKPREVIKLPRGNETMYSVVQKSQHRAHKTDSSREVPDLLKFTCNSTH
ELVVRTPRSVRRVSRTMKGVEYFEVISFEMVQKKVPDGRIIELVKEVSKSYPASEGPERADELVESYRKASTKPYFEWTV
EARDLSLLGSHVRKATYQTYAPILYENDYFFNYMENSKFHPTIEAPKVLAYFLGLWIGDGLTDRTTFSIDSRDTSLMERV
TEYAEKLDLCAEYKDRKEPKVAKTVNLYSKSVRXNGIRNNLNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFL
AGLIDSDGYVTDEHGITATVKTIHTSVRDGLVSVARSLGLVISVNAEPAKIDMSGTSHKMCYAIYMSGGDILLNVLSKCA
SFKKFRPAPVAPPVRECRGFYFELQELEEDDYYGITLSDDSDHQFLLANQVVVHNC |
| Block
A |
CFAKGTTVLMADG 13 |
| Block
B |
LLKFTCNSTHELVV 83 |
| Block
C |
FLGLWIGDG 219 |
| Block
D |
VKNIPSFL 307 |
| Block
E |
FLAGLIDSDG 327
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| Block
H |
TIHTSVRDGLVSVARSLGL 359 |
| Block
F |
YGITLS**DDSDHQFL 445 |
| Block
G |
NQVVVHNC 455
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| Contributed
by |
Fran Perler |
| Comments |
-- |
| References |
-- |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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