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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Pgu-alt GLT1
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| Intein
id |
YSTIN020 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Dhan GLT1
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| Organism
Name |
Pichia (Candida) guilliermondii |
| Exiein
Name |
Glutamate synthase, alt. code 12 |
| Intein
Class |
Theoretical |
| Organism
Description |
Fungi |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
K? |
| Inert
Site Comment |
GLT1-a, R1183 of Dha GluSyn |
| Intein
Size |
553 |
| Intein
N Terminal |
IAMGCIMMRK/C |
| Intein
C Terminal |
SN/CHLNTCPVGI |
| Accession
No |
http://www.broad.mit.edu/annotation/fungi/fgi |
| Intein
aa Sequence |
>Broad Instidute genome sequencing project | Pgu-alt GLT1 intein (including -1 and +1 extein residues)
KCLASDTLVRTTQGLKKVKDVSVGEYLYGADNTPVLCIGANAPETGSLKEIVYEDFDSKKLVSFKCTPDHHLELVLANAA
PELSGSTVTWFSSCTGEHKKQDSTFDLESIVSSFYNDLVDSDDIITFDNVCEAIDVALDEHYHRGGSDRYSEKFNGFITQ
IANEELKSNPEFVRNALHEAAEKFMVEDAPKNFAVTSVSVETTSVESQSVCKSSCACGGVRKIVHQFETIEEAEMAYSLL
LSDVYDRVDPSFVSNGYKFQASVEALEQMCSKDILHNHLHMYRAPAEQVEPLTHSSSLPVDPYFLGLWLGEGSSDSATIS
TTDREVVVWLQQYVERLNKDKPAEASPLRLTKINGFKPGQQMANGFVQKVTVPTYTITSGESFTGGNWNPVYNSLKSMGL
LSNKSNGIPEAYKAADLQSRLALLAGLVDSDGCYVESYNSYRFMQKSELHKKIVYDLKEMATSCGIETTDIDVSESRLYL
GSSETTSAYVVYLGSGSEKLQQSLLLPRKKMVRIESCIQESTPFKVQDVANGEFRAIEVSGGKFQLDNGLQIANC |
| Block
A |
CLASDTLVRTTQG 13 |
| Block
B |
LVSFKCTPDHHLEL 73 |
| Block
C |
FLGLWLGEG 311 |
| Block
D |
NKDKPAEA 344 |
| Block
E |
LLAGLVDSDG 431
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| Block
H |
ELHKKIVYDLKEMATSCGI 465 |
| Block
F |
GEFRAI**EVSGGKFQ 544 |
| Block
G |
NGLQIANC 554
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| Contributed
by |
Tim Goodwin, Margi Butler, Russell Poulter |
| Comments |
DNA translated using the “alternative yeast nuclear” code (no. 12) results in 3 changes of Leu to Ser at 319, 396, 502 (Bulter). |
| References |
Butler 2005B |
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Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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