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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Ctr ThrRS
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| Intein
id |
YSTIN010 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Ctr ThrRS
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| Organism
Name |
Candida tropicalis ATCC750 |
| Exiein
Name |
Threonyl-tRNA synthetase |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
-- |
| Location
in Extein |
N399 |
| Inert
Site Comment |
thrRS-a |
| Intein
Size |
345 |
| Intein
N Terminal |
KETFGLKPMN/C |
| Intein
C Terminal |
GN/CPGHAVMFKS |
| Accession
No |
NCBI Trace DB-21Sep04, 62 assembled reads |
| Intein
aa Sequence |
>NCBI Trace DB-21Sep04 | Ctr ThrRS intein (including -1 and +1 extein residues)
NCLSEDMRVQTNKGFLGLDEVKDQWRDLKFANYNPETKQIQYLPASNFILKDAANHKMVEFSDYDINSDAHGSFSLFVTD
NHDMYVQTGRVDKEAGDINRIVYEENLEFSKVEASQLVGSGKGIRFTTTAPNGIDIASVASYKQVVSENQQQTFLELYGY
WVGNADKVGETGVTFTAANEANSAWLSKAISELEGKVDGTTITDSKLSALFNGSEQSFAEWVWDLAKDELRSVVHGFARA
SGDENKKIYTSSVILRDELVRVLLHAGYTSRFELNATKGWEITYVEDVAQCVNPVLYSDKNVKVVDDYFGRVWCVTVPTG
LIIVQRVVKNAEDVVVKASRPTIVGNC |
| Block
A |
CLSEDMRVQTNKG 13 |
| Block
B |
SFSLFVTDNHDMYV 85 |
| Block
C |
-- |
| Block
D |
-- |
| Block
E |
--
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| Block
H |
-- |
| Block
F |
RVWCVTV**PTGLIIV 323 |
| Block
G |
RPTIVGNC 346
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| Contributed
by |
Shmuel Pietrokovski |
| Comments |
Block F is too poorly conserved to call accurately |
| References |
-- |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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