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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Cne-a RP8 (Fne-A PRP8)
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| Intein
id |
YSTIN006 |
| Intein
Class |
Experimental
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| Prototype
Allele |
Cne-AD PRP8
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| Organism
Name |
Filobasidiella neoformans (Cryptococcus neoformans) Serotype A, PHLS_8104 |
| Exiein
Name |
PRP8, pre-mRNA splicing factor |
| Intein
Class |
Experimental |
| Organism
Description |
Yeast, human pathogen |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
None |
| Location
in Extein |
A? |
| Inert
Site Comment |
PRP8-a, same as A1578 in Sce PRP8 |
| Intein
Size |
171 |
| Intein
N Terminal |
TWEGLFWEKA/C |
| Intein
C Terminal |
HN/SGFEE----- |
| Accession
No |
AAR00330in NCBI/protein |
| Intein
aa Sequence |
>gi|37695591|gb|AAR00330.1|[37695591] Cne-A PRP8 (Fne-A PRP8) intein (including -1 and +1 extein residues)
ACLQNGTRLLRADGSEVLVEDVQEGDQLLGPDGTSRTASKIVRGEERLYRIKTHEGLEDLVCTHNHILSM
YKERFGREGAHSPSAGTSLTESHERVDVTVDDFVRLPQQEQQKYKLFRSTDFVRREQPSASKLATLLHIN
SIELEEEPTKWSGFVVDKDSLYLRYDYLVLHNS |
| Block
A |
CLQNGTRLLRADG 13 |
| Block
B |
LEDLVCTHNHILSM 69 |
| Block
C |
None |
| Block
D |
None |
| Block
E |
None
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| Block
H |
None |
| Block
F |
PTKWSGFVVDKDSLYL 162 |
| Block
G |
DYLVLHNS 172
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| Contributed
by |
Margi Butler |
| Comments |
The organism is also called Cryptococcus neoformans var grubii.
The Fne PRP8 gene has not yet been fully described.
This gene also contains an intron.
Same aa seq for Cne strains Cn 3511 & JEC 21, with 1 silent nt change (Butler 2001).Same intein sequence in strain H99 and IUM93-3231 |
| References |
Butler 2001
Butler 2005
Loftus 2005 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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