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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Cga PRP8
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| Intein
id |
YSTIN004 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Cne-AD PRP8
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| Organism
Name |
Cryptococcus gattii (aka Cryptococcus bacillisporus) |
| Exiein
Name |
PRP8, pre-mRNA splicing factor |
| Intein
Class |
Theoretical |
| Organism
Description |
Yeast, human pathogen |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
None |
| Location
in Extein |
A? |
| Inert
Site Comment |
PRP8-a, same as A1578 in Sce PRP8 |
| Intein
Size |
170 |
| Intein
N Terminal |
TWEGLFWEKA/C |
| Intein
C Terminal |
HN/SGFEESMKNK |
| Accession
No |
AAR00331.1 in NCBI/protein |
| Intein
aa Sequence |
>gi|37695593|gb|AAR00331.1|CbaPRP8_WM02.98| Cga PRP8 intein (including -1 and +1 extein residues)
ACLQNGTRLLRADGSEILVEDVQEGDQLLGPDGTSRTASKIVRGEERLYRIKADELEDLVCTHNHILSL
YKKRSGSEQDPSPSTDLSSTDSYERVDVTVDDFVRLPQQEQQKYRLFRSTGFKRADQPSTSSLATLLHI
MSIQLEEKPTKWSGFVVVKDSLYLRHDYLVLHNS |
| Block
A |
CLQNGTRLLRADG 13 |
| Block
B |
LEDLVCTHNHILSL 68 |
| Block
C |
None |
| Block
D |
None |
| Block
E |
None
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| Block
H |
None |
| Block
F |
PTKWSGFVVDKDSLYL 161 |
| Block
G |
DYLVLHNS 171
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| Contributed
by |
Margi Butler |
| Comments |
The organism is also called Cryptococcus neoformans var gattii and Cryptococcus bacillisporus.
This gene also contains an intron. The PRP8 inteins from numerous Cga strains form 4 clades based on DNA sequence |
| References |
Butler 2005 |
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send comments and suggestions to curator at: curator@ibibiosolutions.com
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at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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