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| The
Yeast Intein Database |
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The Yeast Intein Database is a comprehensive
and curated database devoted to yeast inteins.
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| Inteins
are self-catalytic protein splicing elements. The Yeast Intein Database
and Registry, is a curated compilation of published and unpublished
information about protein splicing. It presents general information
as well as detailed data for each yeast intein, including tabulated
comparisons and a comprehensive bibliography. An intein-specific BLAST
server is now available to assist in identifying new inteins. |
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| Intein
Name |
Cla PRP8
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| Intein
id |
YSTIN003 |
| Intein
Class |
Theoretical
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| Prototype
Allele |
Cne-AD PRP8
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| Organism
Name |
Cryptococcus laurentii strain CBS139 |
| Exiein
Name |
PRP8, pre-mRNA splicing factor |
| Intein
Class |
Theoretical |
| Organism
Description |
Fungi, Basidiomycete yeast, taxon:5418 |
| Domain
of Life |
Eucarya |
| Endonuclease
Activity |
-- |
| Endonuclease
Motif |
DOD |
| Location
in Extein |
S59? |
| Inert
Site Comment |
PRP8-a,same as A1578 in Sce PRP8 |
| Intein
Size |
522 |
| Intein
N Terminal |
TWEGLFWEKS/C |
| Intein
C Terminal |
HN/SGFEESMKFK |
| Accession
No |
AAX38551 in NCBI/protein |
| Intein
aa Sequence |
>gi|61105788|gb|AAX38551.1|[61105788] Cla PRP8 intein (including -1 and +1 extein residues)
SCHAEGTELIKFDRSVVKVEDVVEGDRLLGPDGSPRLVSNLVSGCDRLYRFEFSRSGGEVESLVVTDNHIMMLKRANVVL
SGSGDAGQLEVLDQISVREQFEIVQKTAAEVAAMSEAEREQYRVYRSEGFEHYEQPVDVHPYFLGLWLGDDSRSANAATN
GEPEVRKFLTDYAGELDMHLAHHGDEKRDRRTVKAARLAAGWTLLPRTEGKAGAWIPPATAGYVAPTHSPAPNLRDADGH
RSVSAPSQVDEKPEVSHDDEDMEISDTEEEQSDAIEEIEADDDDAAIVMEGPHGQLTPGGRRDEMQPAKARRRVRRLNRN
QRYGDLADAEVEALLEDVVSGGQSDGQVVRSAQLLDKLQSLGVATSNEKEKPAQGSKHIPQVYLENTRDVRLRVLAGLLD
SHGCLVSPENCYMFSQPETDGRLFWDAVHLARSLGFGVSTDRKTQMNPGSDVATPHLLALITGDLTQVPCLLRRQQAVQR
YLPQQHTFRIKSVTLESKSTPWYGFAVDSDRQYLRHDWMVLHNS |
| Block
A |
CHAEGTELIKFDR 13 |
| Block
B |
VESLVVTDNHIMML 72 |
| Block
C |
FLGLWLGDD 150 |
| Block
D |
SKHIPQVY 382 |
| Block
E |
VLAGLLDSHG 402
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| Block
H |
ETDGRLFWDAVHLARSLGF 435 |
| Block
F |
STPWYGFAVDSDRQYL 513 |
| Block
G |
DWMVLHNS 523
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| Contributed
by |
Margi Butler |
| Comments |
Most other PRP8 inteins are mini-inteins |
| References |
Butler 2005 |
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Please
send comments and suggestions to curator at: curator@ibibiosolutions.com
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Developed
at the Bioinformatics Research Laboratory
of IBI Biosolutions Pvt. Ltd.
Copyright
© IBI Biosolutions Pvt. Ltd.. (2008).
For problems or questions regarding this Web site contact us at: curator@ibibiosolutions.com
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