The Yeast Intein Database
  The Yeast Intein Database is a comprehensive and curated database devoted to yeast inteins.

  Bibliography
 

1 Pietrokovski S. (2001). Inteins- Protein Introns. http://bioinfo.weizmann.ac.il/~pietro/inteins.

2. Xiang-Qin Liu: Protein-splicing intein: Genetic mobility, origin, and evolution: Vol. 34: 61-76 (Volume publication date December    2000)

3. J. Peter Gogarten, Alireza G. Senejani, ­ Olga Zhaxybayeva, ­ Lorraine Olendzenski, and ­ Elena Hilario: INTEINS: Structure,    Function, and Evolution: Vol. 56: 263-287, April 29, 2002

4. Wenchang Sun, Jing Yang, and Xiang-Qin Liu: Synthetic two-piece and three-piece split inteins for protein trans-splicing: Vol.    279 Issue 34, 35281-35286, May 17, 2004

5. Timothy JD Goodwin, Margaret I Butler: Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes: Volume    4; 2006, Published online 2006 October 27

6. M W Southworth, E Adam, D Panne, R Byer, R Kautz, and F B Perler: Control of protein splicing by intein fragment reassembly:    Volume 17(4); February 16, 1998

7. Francine B. Perler:InBase: the Intein Database : Vol. 30 No. 1 383-384 Received August 31, 2001; Accepted September 18, 2001

8. US Patent 5795731 - Inteins as antimicrobial targets: genetic screens for intein function: US Patent Issued on August 18, 1998

9. Marlene Belfort, Barry L. Stoddard, David W. Wood, Victoria Derbyshire: Homing Endonucleases and Inteins: Nucleic Acids and    Molecular Biology: Vol. 16

10. Jianjun Yang: TWO GENES FOR ONE PROTEIN:APPLICATION OF SSP DNAE SPLIT INTEIN IN PLANT GENETIC ENGINEERING: MAY    2003

11. Anya Bakhrat, Melissa S. Jurica,1 Barry L. Stoddard† and Dina Raveh: Homology Modeling and Mutational Analysis of Ho      Endonuclease of Yeast: publiced October 31, 2003

12. Maurice W. Southworth, Jack Benner and Francine B. Perler: An alternative protein splicing mechanism for inteins lacking an
     N-terminal nucleophile: The EMBO Journal (2000) 19, 5019-5026, Received 19 June 2000

13. Yi Ding , Ming-Qun Xu , Inca Ghosh , Xuehui Chen , Sebastien Ferrandon , Guillaume Lesage and Zihe Rao: Crystal Structure of a      Mini-intein Reveals a Conserved Catalytic Module Involved in Side Chain Cyclization of Asparagine during Protein Splicing: Vol.      278, Issue 40, 39133-39142, Received for publication, June 12, 2003

14. Victoria Derbyshire, David W. Wood, , Wei Wu, John T. Dansereau, Jacob Z. Dalgaard , and Marlene Belfort: Genetic definition of      a protein-splicing domain: Functional mini-inteins support structure predictions and a model for intein evolution: Vol. 94, pp.      11466-11471, October 1997

15. Perler, F. B. (2002). InBase, the Intein Database. Nucleic Acids Res. 30, 383-384

16. Timothy JD Goodwin,1 Margaret I Butler, 1 and Russell TM Poulter: Multiple, non-allelic, intein-coding sequences in eukaryotic      RNA polymerase genes: v.4; Published online 2006 October 27

17. Lixin Chen, Jack Benner, and Francine B. Perler: Protein Splicing in the Absence of an Intein Penultimate Histidine: Vol. 275;      published on April 18, 2000

18. Masato Kawasaki , Satoru Nogami , Yoshinori Satow , Yoshikazu Ohya and Yasuhiro Anraku: Identification of Three Core Regions      Essential for Protein Splicing of the Yeast Vma1 Protozyme: Volume 272; publication, October 7, 1996

19. Jianxin Shi and Tom W. Muir: Development of a Tandem Protein Trans-Splicing System Based on Native and Engineered Split      Inteins: J. Am. Chem. Soc., 127 (17); April 8, 2005

20. F B Perler, G J Olsen, and E Adam: Compilation and analysis of intein sequences: Volume 25(6); March 15, 1997

21. Edna Nahon, Dina Raveh: Targeting a truncated Ho-endonuclease of yeast to novel DNA sites with foreign zinc fingers: Volume      26, Number 5; January 22, 1998

22. Henry Paulus: PROTEIN SPLICING AND RELATED FORMS OF PROTEIN AUTOPROCESSING: Vol. 69: 447-496, July 2000

23. Francine B. Perler: InBase: the Intein Database: Vol. 30, No. 1 383-384, Research, 2002

24. Dawkins R. (1976). The Selfish Gene. Oxford, UK: Oxford Univ. Press 1997.

25. Mathys S, Evans TC, Chute IC, Wu H, Chong S, et al. (1999). Characterization of a self-splicing mini-intein and its conversion      into autocatalytic N- and C-terminal cleavage elements: facile production of protein building blocks for protein ligation. Gene,      231: 1-13.

26. Philip Shemella, Brian Pereira, Yiming Zhang, Patrick Van Roey, Georges Belfort, Shekhar Garde, and Saroj K. Nayak: Mechanism      for Intein C-Terminal Cleavage: A Proposal from Quantum Mechanical Calculations: v.92(3); Feb 1, 2007Biophys J. 2007;      Published online 2006 November 3

27. Stephen F. Altschul*, Thomas L. Madden, Alejandro A. Schäffer1, Jinghui Zhang, Zheng Zhang2, Webb Miller2 and David J.      Lipman: Volume 25, Number 17; July 16, 1997

28. Christopher J. Noren, Jimin Wang, and Francine B. Perler (2000). Dissecting the Chemistry of Protein Splicing and Its      Applications. Angew. Chem. Int. Ed. 39: 450- 466.

29. Perler F.B., Davis,E.O., Dean,G.E., Gimble,F.S., Jack,W.E., Neff,N., Noren,C.J., Thorner,J. and Belfort,M. (1994). Protein splicing      elements: inteins and exteins-a definition of terms and recommended nomenclature. ,Nucleic Acids Res. 22: 1125-1127.

30. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of      protein database search programs. Nucleic Acids Res. 25: 3389-402

31. Dawkins R. (1976). The Selfish Gene. Oxford, UK: Oxford Univ. Press 1997.

32. Altschul S.F., Gish W., Miller W., Myers E.W., and Limpan D.J. (1990). Basic Local Alignment search tool, J. Mol. Biol. 215:
     403-410.

33. Ming-Qun Xu and Francine B.Perler: The mechanism of protein splicing and its
     modulation by mutation: The EMBO Journal vol.15 no.19 pp.5146-5153, 1996.

34. Steve-O: Inteins: 03 Apr 2007

35. Structure des proteins: BCM-514: http://pages.usherbrooke.ca/bcm-514-bl/2c.html

36. de Grey, Aubrey D. N. J. (2000): Mitochondrial gene therapy: an arena for the biomedical use of inteins. Trends in Biotechnology      18(9): 394-399

 

 

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