The Restriction EnzyBase Project
Bioinformatics Research Lab.
IBI Biosolutions Pvt. Ltd., India




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   REB References


  1. Roberts, R.J., Vincze, T., Posfai, J., Macelis, D., (2007), REBASE-enzymes and genes for DNA restriction and modification. Nucleic Acid Res., 35, D269-D270.

  2. Bair CL, Black LW. (2007 Feb 23) type IV modification dependent restriction nuclease that targets glucosylated hydroxymethyl cytosine modified DNAs.. J Mol Biol.;366(3):768-78.

  3. Roberts, R.J., Vincze, T., Posfai, J., Macelis, D., (2005), REBASE-restriction enzymes and methyltransferases. Nucleic Acid Res., 33, D230-D232..

  4. Semenova E, Minakhin L, Bogdanova E, Nagornykh M, Vasilov A, Heyduk T, Solonin A, Zakharova M, Severinov K. (2005) Transcription regulation of the EcoRV restriction-modification system Nucleic Acids Res., 33(21): 6942-6951.

  5. Ichige A, Kobayashi I(2005)-Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems.Ichige A, Kobayashi I. J Bacteriol.; 187(19): 6612-6621

  6. Richard J. Roberts, Marlene Belfort1, Timothy Bestor2, Ashok S. Bhagwat3, Thomas A. Bickle4, Jurate Bitinaite, Robert M. Blumenthal5, Sergey Kh. Degtyarev6, David T. F. Dryden7, Kevin Dybvig8, Keith Firman9, Elizaveta S. Gromova10, Richard I. Gumport11, Stephen E. Halford12, Stanley Hattman13, Joseph Heitman14, David P. Hornby15, Arvydas Janulaitis16, Albert Jeltsch17, Jytte Josephsen18, Antal Kiss19, Todd R. Klaenhammer20, Ichizo Kobayashi21, Huimin Kong, Detlev H. Krüger22, Sanford Lacks23, Martin G. Marinus24, Michiko Miyahara25, Richard D. Morgan, Noreen E. Murray26, Valakunja Nagaraja27, Andrzej Piekarowicz28, Alfred Pingoud17, Elisabeth Raleigh, Desirazu N. Rao27, Norbert Reich29, Vladimir E. Repin30, Eric U. Selker31, Pang-Chui Shaw32, Daniel C. Stein33, Barry L. Stoddard34, Waclaw Szybalski35, Thomas A. Trautner36, James L. Van Etten37, Jorge M. B. Vitor38, Geoffrey G. Wilson and Shuang-yong Xu- Press-(2003)A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.Nucleic Acids Research, Vol. 31, No. 7 1805-1812

  7. Sadykov M, Asami Y, Niki H, Handa N, Itaya M, Tanokura M, Kobayashi I.(2003)-Multiplication of a restriction-modification gene complex . Molecular Microbiology. Volume 48 Issue 2 Page 417

  8. Takahashi N, Naito Y, Handa N, Kobayashi I.(2002)A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.J Bacteriol. Nov;184(22):6100-8

  9. Kobayashi I- (2001)Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res. ;29(18):3742-56

  10. 1Kusano K, Naito T, Handa N, Kobayashi I. Restriction-modification systems as genomic parasites in competition for specific sequences.Proc Natl Acad Sci U S A. 1995 Nov 21;92(24):11095-9.

  11. Murray,N.E. (2000) Type I restriction systems: sophisticated molecular machines. Microbiol. Mol. Biol. Rev., 64, 412-43

  12. Jeltsch A, Pingoud A(1996 Feb) -Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. : J Mol Evol.;42(2):91-6

  13. Naito T, Kusano K, Kobayashi I(1995 Feb) .Selfish behavior of restriction-modification systems.-Science. 10;267(5199):897-9

  14. A, Kobayashi I.- Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems.Ichige- Department of Medical Genome Sciences, Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

  15. Lyn Sue Kahng and Lucy Shapiro- The CcrM DNA Methyltransferase of Agrobacterium tumefaciens Is Essential, and Its Activity Is Cell Cycle Regulated. -Department of Developmental Biology1 and Division of Gastroenterology, Department of Internal Medicine,2 Stanford University School of Medicine, Stanford, California.

  16. Titheradge,A.J., King,J., Ryu,J. and Murray,N.E.- Families of restriction enzymes: an analysis prompted by molecular and genetic data for type ID restriction and modification systems. Nucleic Acids Res., 29, 4195-4205.

 
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