Comparative Genome Analysis and Development of Database System
for Apple Mosaic Virus; RNA1, RNA2, RNA3
and
Apple Chlorotic Leaf Spot Virus strain P863

Home Page
Apple Mosaic Virus
Apple Chlorotic leaf Spot Virus
Genomes & Genes
Proteins & Domains
Identified ORFs
Results & Discussion
Acknowledgement
Contact us

Project Developed by;
Pankaj Kr. Agarwal
B.E. (Biotechnology)
Dept. of Biotechnology
SEC Sikar, Rajasthan.
INDIA

email:
pankajbt@gmail.com

ORF Finder Results


Apple Chlorotic Leaf Spot Virus P863: The Apple Chlorotic Leaf Spot Virus P863 genome showing the only three descriptive gene and protein are found.

ORF Id

Description

Coordinates

Strand

aclsv4.1

RNA-directed RNA polymerase

152.. 5806

+2

aclsv4.2

Eukaryotic and viral aspartyl protease

5718.. 7100

+3

aclsv4.3

No information found

6613.. 7365

+1

aclsv4.4

No information found

4385.. 4678

-1

aclsv4.5

No information found

1822.. 2115

-2

aclsv4.6

No information found

7089.. 7361

-3

aclsv4.7

No information found

2650.. 2910

-2

aclsv4.8

No information found

558.. 806

+3

aclsv4.9

No information found

398.. 619

-1

aclsv4.10

No information found

5164.. 5379

-2

aclsv4.11

No information found

7294.. 7491

-2

aclsv4.12

No information found

5664.. 5846

-3

aclsv4.13

No information found

1192.. 1371

-2

aclsv4.14

No information found

2435.. 2602

-1

aclsv4.15

No information found

5974.. 6138

+1

aclsv4.16

No information found

4677.. 4832

+3

aclsv4.17

No information found

6340.. 6480

+1

aclsv4.18

No information found

2216.. 2356

-1

aclsv4.19

No information found

1931.. 2071

-1

aclsv4.20

No information found

6315.. 6452

-3

aclsv4.21

No information found

612.. 749

-3

aclsv4.22

No information found

5237.. 5371

-1

aclsv4.23

No information found

2601.. 2735

+3

aclsv4.24

Prokaryotic membrane lipoprotein lipid

1488.. 1622

-3

aclsv4.25

No information found

2421.. 2543

+3

aclsv4.26

No information found

3022.. 3141

-2

aclsv4.27

No information found

5899.. 6012

-2

aclsv4.28

No information found

3358.. 3468

-2

aclsv4.29

No information found

6629.. 6736

-1

aclsv4.30

No information found

5007.. 5111

-3

aclsv4.31

No information found

2028.. 2132

+3

aclsv4.32

No information found

1185.. 1289

-3

aclsv4.33

No information found

848.. 949

-1

Showing the information genes and proteins in possible coding sequences (ORF’s)

Genome length

ORF find

Gene find

Protein find

7555

33

3

3



Apple Mosaic Virus RNA1: The Apple Mosaic Virus RNA1 genome showing the only one descriptive gene and protein are found.

ORF Id

Description

Coordinates

Strand

Apmvrna1.1

No information found

79.. 3219

+1

Apmvrna1.2

No information found

36.. 296

-1

Apmvrna1.3

No information found

2555.. 2770

-2

Apmvrna1.4

No information found

655.. 837

-3

Apmvrna1.5

No information found

3299.. 3475

+2

Apmvrna1.6

No information found

472.. 627

-3

Apmvrna1.7

No information found

3067.. 3210

-3

Apmvrna1.8

No information found

1806.. 1949

-1

Apmvrna1.9

No information found

1681.. 1809

-3

Apmvrna1.10

No information found

2575.. 2700

-3

Apmvrna1.11

No information found

657.. 782

+3

Apmvrna1.12

No information found

850.. 972

-3

Apmvrna1.13

No information found

3216.. 3335

+3

Apmvrna1.14

No information found

831.. 950

-1

Apmvrna1.15

No information found

1897.. 2010

-3

Apmvrna1.16

No information found

1484.. 1597

+2

Apmvrna1.17

No information found

872.. 982

+2

Apmvrna1.18

No information found

53.. 163

-2

Apmvrna1.19

No information found

3370.. 3474

-3

Apmvrna1.20

No information found

1382.. 1483

+2

Showing the information genes and proteins in possible coding sequences (ORF’s)

Genome length

ORF find

Gene find

Protein find

3476 nt

20

01

1



Apple Mosaic Virus RNA2: The Apple Mosaic Virus RNA2 genome showing the only one descriptive gene and protein are found.

This table shows the possible coding sequences, coordinate and strand.

ORF Id

Description

Coordinates

Strand

Apmvrna2.1

RNA-directed RNA polymerase

80.. 2707

+2

Apmvrna2.2

No information found

1150.. 1404

-1

Apmvrna2.3

No information found

964.. 1134

-1

Apmvrna2.4

No information found

1107.. 1253

+3

Apmvrna2.5

No information found

702.. 839

+3

Apmvrna2.6

No information found

1089.. 1211

-2

Apmvrna2.7

No information found

1969.. 2076

-1

Apmvrna2.8

No information found

1454.. 1561

-3

Apmvrna2.9

No information found

2873.. 2977

-3

 Showing the information genes and proteins in possible coding sequences (ORF’s)

Genome length

ORF find

Gene find

Protein find

2979nt

09

01

01



Apple Mosaic Virus RNA3: The Apple Mosaic Virus RNA3 genome showing the two descriptive genes and proteins are found.

This table shows the possible coding sequences, coordinate and strand.

ORF Id

Description

Coordinates

Strand

Apmvrna3.1

No information found

169.. 1029

+1

Apmvrna3.2

No information found

1126.. 1794

+1

Apmvrna3.3

No information found

1230.. 1472

-3

Apmvrna3.4

No information found

498.. 728

-3

Apmvrna3.5

No information found

97.. 258

-2

Apmvrna3.6

No information found

1003.. 1149

-2

Apmvrna3.7

No information found

1499.. 1642

+2

Apmvrna3.8

No information found

1.. 141

+1

Apmvrna3.9

No information found

306.. 443

-3

Apmvrna3.10

No information found

1791.. 1916

+3

Apmvrna3.11

No information found

850.. 963

-2

Apmvrna3.12

No information found

1877.. 1987

+2

Apmvrna3.13

No information found

573.. 683

+3

Apmvrna3.14

No information found

1950.. 2054

-3

Showing the information genes and proteins in possible coding sequences (ORF’s)

Genome length

ORF find

Gene find

Protein find

2056nt

14

02

02


 
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