Comparative Genome Analysis and Development of Database System
for Apple Mosaic Virus; RNA1, RNA2, RNA3
and
Apple Chlorotic Leaf Spot Virus strain P863

Home Page
Apple Mosaic Virus
Apple Chlorotic leaf Spot Virus
Genomes & Genes
Proteins & Domains
Identified ORFs
Results & Discussion
Acknowledgement
Contact us

Project Developed by;
Pankaj Kr. Agarwal
B.E. (Biotechnology)
Dept. of Biotechnology
SEC Sikar, Rajasthan.
INDIA

email:
pankajbt@gmail.com

BLAST Results


Showing Apple Chlorotic Leaf Spot Virus BLAST Result

ORF id

Hit Protein

Identical Similarity

Score

E. value

aclsv4.1

Replicase

1884/1884 (100%)

3912 bits

0.0

aclsv4.2

movement protein

460/460 (100%)

942 bits

0.0

aclsv4.3

Hypothetical coat protein

216/250 (86%)

439 bits

9e-122

aclsv4.4

lipid-A-disaccharide synthase

18/48 (37%)

36.2 bits

0.64

aclsv4.5

ABC-type organic solvent resistance transporter, permease protein.

16/40 (40%),

35.4 bits

1.2

aclsv4.6

No hit

-

-

-

aclsv4.7

DNA-directed RNA polymerase II largest subunit, putative

18/46 (39%)

34.7 bits

2.3

aclsv4.8

hypothetical protein, conserved

17/34 (50%)

35.0 bits

1.4

aclsv4.9

hypothetical protein Dde_2617

18/50 (36%)

35.0 bits

1.6

aclsv4.10

transcriptional regulator

23/66 (34%)

35.0 bits

1.7

aclsv4.11

No hit

No hit

No hit

No hit

aclsv4.12

No hit

-

-

-

aclsv4.13

ATP phosphoribosyltransferase

16/36 (44%)

36.2 bits

0.72

aclsv4.14

No hit

-

-

-

aclsv4.15

No hit

-

-

-

aclsv4.16

No hit

-

-

-

aclsv4.17

No hit

-

-

-

aclsv4.18

No hit

-

-

-

aclsv4.19

No hit

-

-

-

aclsv4.20

No hit

-

-

-

aclsv4.21

virion structural protein

15/30 (50%)

33.5 bits

4.4

aclsv4.22

No hit

-

-

-

aclsv4.23

No hit

-

-

-

aclsv4.24

No hit

-

-

-

aclsv4.25

No hit

-

-

-

aclsv4.26

No hit

-

-

-

aclsv4.27

No hit

-

-

-

aclsv4.28

No hit

-

-

-

aclsv4.29

No hit

-

-

-

aclsv4.30

No hit

-

-

-

aclsv4.31

No hit

-

-

-

aclsv4.32

No hit

-

-

-

aclsv4.33

No hit

-

-

-




 
Showing Apple Mosaic Virus RNA1 BLAST Result

ORF id

Hit protein

Identical Similarity

Score

E. value

Apmvrna1.1

putative methyltransferase/helicase

1046/1046 (100%)

2188 bits

0.0

Apmvrna1.2

putative carboxylase

17/45 (37%)

32.7 bits

7.6

Apmvrna1.3

No hit

-

-

-

Apmvrna1.4

No hit

-

-

-

Apmvrna1.5

No hit

-

-

-

Apmvrna1.6

No hit

-

-

-

Apmvrna1.7

No hit

-

-

-

Apmvrna1.8

No hit

-

-

-

Apmvrna1.9

No hit

-

-

-

Apmvrna1.10

No hit

-

-

-

Apmvrna1.11

No hit

-

-

-

Apmvrna1.12

No hit

-

-

-

Apmvrna1.13

No hit

-

-

-

Apmvrna1.14

No hit

-

-

-

Apmvrna1.15

No hit

-

-

-

Apmvrna1.16

No hit

-

-

-

Apmvrna1.17

N o hit

-

-

-

Apmvrna1.18

No hit

-

-

-

Apmvrna1.19

No hit

-

-

-

Apmvrna1.20

No hit

-

-

-




 
Showing Apple Mosaic Virus RNA2 BLAST Result

ORF id

Hit protein

Identical Similarity

Score

E. value

Apmvrna2.1

putative polymerase

875/875 (100%)

1808 bits

0.0

Apmvrna2.2

No hit

-

-

-

Apmvrna2.3

No hit

-

-

-

Apmvrna2.4

No hit

-

-

-

Apmvrna2.5

No hit

-

-

-

Apmvrna2.6

No hit

-

-

-

Apmvrna2.7

No hit

-

-

-

Apmvrna2.8

No hit

-

-

-

Apmvrna2.9

No hit

-

-

-





Showing Apple Mosaic Virus RNA3 BLAST Result

ORF Id

Hit Protein

Identical Similarity

Score

E. value

Apmvrna3.1

putative cell-to-cell movement protein

286/286 (100%)

588 bits

2e-166

Apmvrna3.2

coat protein

222/222 (100%)

461 bits

2e-128

Apmvrna3.3

No hit

-

-

-

Apmvrna3.4

No hit

-

-

-

Apmvrna3.5

No hit

-

-

-

Apmvrna3.6

No hit

-

-

-

Apmvrna3.7

No hit

-

-

-

Apmvrna3.8

No hit

-

-

-

Apmvrna3.9

No hit

-

-

-

Apmvrna3.10

No hit

-

-

-

Apmvrna3.11

No hit

-

-

-

Apmvrna3.12

No hit

-

-

-

Apmvrna3.13

No hit

-

-

-

Apmvrna3.14

No hit

-

-

-

 


 
© 2008, IBI Biosolutions Pvt. Ltd. INDIA